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2021

Martinez-Lopez, J; Hernandez-Ibarburu, G; Alonso, R; Sanchez-Pina, J M; Zamanillo, I; Lopez-Muñoz, N; Iñiguez, Rodrigo; Cuellar, C; Calbacho, M; Paciello, M L; Ayala, R; García-Barrio, N; Perez-Rey, D; Meloni, L; Cruz, J; Pedrera-Jiménez, M; & J de la Cruz, P Serrano-Balazote

Impact of COVID-19 in patients with multiple myeloma based on a global data network Artículo de revista

En: Blood Cancer Journal, vol. 11, 2021, ISSN: 2044-5385.

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2020

Millan-Fernandez-Montes, A; Perez-Rey, D; Hernandez-Ibarburu, G; Palchuk, MB; Muelle, C; Claerhout, B

Mapping clinical procedures to the ICD-10-PCS: The German operation and procedure classification system use case Artículo de revista

En: Journal of Biomedical Informatics, vol. 109, 2020, ISSN: 1532-0464.

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2019

Hernandez-Ibarburu, G; Perez-Rey, D; Alonso-Oset, E; Alonso-Calvo, R; [de K Schepper],; Meloni, L; Claerhout, B

ICD-10-CM extension with ICD-9 diagnosis codes to support integrated access to clinical legacy data Artículo de revista

En: International Journal of Medical Informatics, vol. 129, pp. 189 - 197, 2019, ISSN: 1386-5056.

Resumen | Enlaces | BibTeX | Etiquetas: clinical terminologies, component, data integration, ICD-10, ICD-9, interoperability

Hernandez-Ibarburu, G; Perez-Rey, D; Alonso-Oset, E; Alonso-Calvo, R; Voets, D; Mueller, C; Claerhout, B; Custodix, N V

ICD-10-PCS extension with ICD-9 procedure codes to support integrated access to clinical legacy data Artículo de revista

En: International Journal of Medical Informatics, vol. 122, pp. 70 - 79, 2019, ISSN: 1386-5056.

Resumen | Enlaces | BibTeX | Etiquetas: clinical terminologies, component, data integration, ICD-10, ICD-9, interoperability

Paraiso-Medina, S; Perez-Rey, D; Alonso-Calvo, R; Munteanu, CR; Pazos, Al; Kulikowski, CA; Maojo, V

Translational Bioinformatics: Informatics, Medicine, and -Omics Capítulo de libro

En: Narayan, Roger (Ed.): Encyclopedia of Biomedical Engineering, pp. 507 - 514, Elsevier, 2019, ISBN: 978-0-12-805144-3.

Resumen | Enlaces | BibTeX | Etiquetas: Drugs discovery, Medical informatics, Personalized medicine, Precision medicine, Translational bioinformatics

2018

Hernandez-Ibarburu, G; Perez-Rey, D; Alonso-Oset, E; Alonso-Calvo, R; Voets, D; Mueller, C; Claerhout, B

ICD-10-PCS Extension with ICD-9 Procedure Codes to Support Integrated Access to Clinical Legacy Data Artículo de revista

En: International Journal of Medical Informatics, 2018.

Resumen | Enlaces | BibTeX | Etiquetas: clinical terminologies, component, data integration, ICD-10, ICD-9, interoperability

2017

Perez-Rey, D; Alonso-Calvo, R; Paraiso-Medina, S; Munteanu, C R; Garcia-Remesal, M

SNOMED2HL7: A tool to normalize and bind SNOMED CT concepts to the HL7 Reference Information Model Artículo de revista

En: Comput Methods Programs Biomed, vol. 149, pp. 1–9, 2017.

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Alonso-Calvo, R; Paraiso-Medina, S; Perez-Rey, D; Alonso-Oset, E; van Stiphout, R; Yu, S; Maojo, V

A semantic interoperability approach to support integration of gene expression and clinical data in breast cancer Artículo de revista

En: Computers in Biology and Medicine, vol. 87, pp. 179–186, 2017.

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2016

Kondylakis, H; Claerhout, B; Keyur, M; Koumakis, L; van Leeuwen, J; Marias, K; Perez-Rey, D; Schepper, K De; Tsiknakis, M; Bucur, A

The INTEGRATE project: Delivering solutions for efficient multi-centric clinical research and trials Artículo de revista

En: J Biomed Inform, vol. 62, pp. 32–47, 2016.

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Bucur, A; van Leeuwen, J; Chen, N Z; Claerhout, B; de Schepper, K; Perez-Rey, D; Paraiso-Medina, S; Alonso-Calvo, R; Mehta, K; Krykwinski, C

Cohort Selection and Management Application Leveraging Standards-based Semantic Interoperability and a Groovy DSL Artículo de revista

En: AMIA Joint Summits on Translational Science Proceedings, vol. 2016, pp. 25–32, 2016.

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2015

Paraiso-Medina, S; Perez-Rey, D; Bucur, A; Claerhout, B; Alonso-Calvo, R

Semantic Normalization and Query Abstraction Based on SNOMED-CT and HL7: Supporting Multicentric Clinical Trials Artículo de revista

En: IEEE J Biomed Health Inform, vol. 19, no. 3, pp. 1061-1067, 2015.

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Alonso-Calvo, R; Perez-Rey, D; Paraiso-Medina, S; Claerhout, B; Hennebert, P; Bucur, A

Enabling semantic interoperability in multi-centric clinical trials on breast cancer Artículo de revista

En: Computed Methods and Programs in Biomedicine, vol. 118, no. 3, pp. 322-329, 2015.

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Ibrahim, A; Bucur, A; Perez-Rey, D; Alonso-Oset, E; de Hoog, M; Dekker, A; Marshall, M S

Case Study for Integration of an Oncology Clinical Site in a Semantic Interoperability Solution based on HL7 v3 and SNOMED-CT: Data Transformation Needs Artículo de revista

En: ÄMIA Jt Summits Transl Sci Proc, vol. 2015, pp. 71, 2015.

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2014

Bucur, A; Leeuwen, J Van; Chen, N Z; Claerhout, B; Schepper, K De; Perez-Rey, D; Alonso-Calvo, R; Pugliano, L; Saini, K

Supporting patient screening to identify suitable clinical trials Artículo de revista

En: Stud Health Technol Inform, vol. 205, pp. 823–827, 2014.

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2013

Aso, S; Perez-Rey, D; Alonso-Calvo, R; Rico-Diez, A; Bucur, A; Claerhout, B; Maojo, V

Analyzing SNOMED CT and HL7 Terminology Binding for Semantic Interoperability on Post-Genomic Clinical Trials Conferencia

14th World Congress on Medical and Health (medinfo2013), 2013.

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Moratilla, J M; Alonso-Calvo, R; Molina-Vaquero, G; Paraiso-Medina, S; Perez-Rey, D; Maojo, V

A data model based on semantically enhanced HL7 RIM for sharing patient data of breast cancer clinical trials Conferencia

14th World Congress on Medical and Health (medinfo2013), 2013.

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Paraiso-Medina, S; Perez-Rey, D; Alonso-Calvo, R; Claerhout, B; de Schepper, K; Hennebert, P; van Leeuwen, J; Bucur, A

Semantic Interoperability Solution for Multicentric Breast Cancer Trials at the INTEGRATE EU Project. Conferencia

Healthinf 2013, VI International Conference on Health Informatics, 2013.

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Garcia-Remesal, M; Garcia-Ruiz, A; Perez-Rey, D; de la Iglesia, D; Maojo, V

Using nanoinformatics methods for automatically identifying relevant nanotoxicology entities from the literature Artículo de revista

En: Biomed Res Int, vol. 2013, pp. 410294, 2013.

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2012

Bucur, A; van Leeuwen, J; Perez-Rey, D; Alonso-Calvo, R; Claerhout, B; de Schepper, K

Identifying the Semantics of Eligibility Criteria of Clinical Trials based on relevant Medical Ontologies Conferencia

IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE2012), 2012.

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Maojo, V; Fritts, M; Martin-Sanchez, F; la Iglesia, D De; Cachau, R E; Garcia-Remesal, M; Crespo, J; Mitchell, J A; Anguita, A; Baker, N; Barreiro, J M; Benitez, S E; la Calle, G De; Facelli, J C; Ghazal, P; Geissbuhler, A; Gonzalez-Nilo, F; Graf, N; Grangeat, P; Hermosilla, I; Hussein, R; Kern, J; Koch, S; Legre, Y; Lopez-Alonso, V; Lopez-Campos, G; Milanesi, L; Moustakis, V; Munteanu, C; Otero, P; Pazos, A; Perez-Rey, D; Potamias, G; Sanz, F; Kulikowski, C

Nanoinformatics: developing new computing applications for nanomedicine Artículo de revista

En: Comput Sci Eng, vol. 94, no. 6, pp. 521–539, 2012.

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Maojo, V; Garcia-Remesal, M; Bielza, C; Crespo, J; Perez-Rey, D; Kulikowski, C

Biomedical informatics publications: a global perspective: part I: conferences Artículo de revista

En: Methods Inf Med, vol. 51, no. 1, pp. 82–90, 2012.

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Maojo, V; Garcia-Remesal, M; Bielza, C; Crespo, J; Perez-Rey, D; Kulikowski, C

Biomedical informatics publications: a global perspective. Part II: Journals Artículo de revista

En: Methods Inf Med, vol. 51, no. 2, pp. 131–137, 2012.

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Perez-Rey, D; Jimenez-Castellanos, A; Garcia-Remesal, M; Crespo, J; Maojo, V

CDAPubMed: a browser extension to retrieve EHR-based biomedical literature Artículo de revista

En: BMC Med Inform Decis Mak, vol. 12, pp. 29, 2012.

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2011

Fernandez, I; Jimenez-Castellanos, A; de Cortazar, X Garcia; Perez-Rey, D

A New Method to Retrieve, Cluster And Annotate Clinical Literature Related To Electronic Health Records Conferencia

2011.

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Maojo, V; Garcia-Remesal, M; de la Iglesia, D; Crespo, J; Perez-Rey, D; Chiesa, S; Fritts, M; Kulikowski, C

Nanoinformatics: Developing Advanced Informatics Applications for Nanomedicine. A. Prokop (ed.), Intracellular Delivery. Fundamental Biomedical Technologies, 5: Fundamentals and Applications Capítulo de libro

En: Intracellular Delivery: Fundamentals and Applications (Fundamental Biomedical Technologies) , Capítulo 26, pp. 847-860, Springer Science+Business Media B.V., 2011, ISBN: 10:9400712472.

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Maojo, V; Crespo, J; Garcia-Remesal, M; de la Iglesia, D; Perez-Rey, D; Kulikowski, C

Biomedical ontologies: toward scientific debate Artículo de revista

En: Methods Inf Med, vol. 50, no. 3, pp. 203–216, 2011.

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2010

Garcia-Remesal, M; Cuevas, A; Perez-Rey, D; Martin, L; Anguita, A; de la Iglesia, D; de la Calle, G; Crespo, J; Maojo, V

PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids Artículo de revista

En: Bioinformatics, vol. 26, no. 21, pp. 2801-2802, 2010.

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Anguita, A; Martin, L; Perez-Rey, D; Maojo, V

A review of Methods and Tools for Database Integration in Biomedicine Artículo de revista

En: Current Bioinformatics, vol. 5, no. 4, pp. 253-269, 2010.

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Garcia-Remesal, M; Cuevas, A; Lopez-Alonso, V; Lopez-Campos, G; de la Calle, G; de la Iglesia, D; Perez-Rey, D; Crespo, J; Martin-Sanchez, F; Maojo, V

A method for automatically extracting infectious disease-related primers and probes from the literature Artículo de revista

En: BMC Bioinformatics, vol. 11, pp. 410, 2010.

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2007

Perez-Rey, D; Anguita, A; Crespo, J; Maojo, V

An Ontology-based and Distributed KDD Model for Biomedical Sources Conferencia

The Americal Medical Informatics Association (AMIA 2007): 1074, 2007.

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de la Calle, G; van Mulligen, E M; Molero, E; Perez-Rey, D; Martin, L; Crespo, J; Maojo, V

Education and research in INFOBIOMED, the European Network of Excellence in Biomedical Informatics Artículo de revista

En: The American Medical Informatics Association (AMIA 2007): 927, pp. 927, 2007.

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Alonso-Calvo, R; Maojo, V; Billhardt, H; Martin-Sánchez, F; Garcia-Remesal, M; Perez-Rey, D

An agent- and ontology-based system for integrating public gene, protein, and disease databases Artículo de revista

En: Journal of Biomedical Informatics, vol. 40, no. 1, pp. 17-29, 2007.

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2006

Perez-Rey, D; Anguita, A; Crespo, J

OntoDataClean: Ontology-Based Integration and Preprocessing of Distributed Data Artículo de revista

En: Lecture notes in Computer Science, vol. 4345 , pp. 262-272, 2006.

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Perez-Rey, D; Maojo, V; Garcia-Remesal, M; Alonso-Calvo, R; Billhardt, H; Martin-Sanchez, F; Sousa, A

ONTOFUSION: ontology-based integration of genomic and clinical databases Artículo de revista

En: Comput. Biol. Med., vol. 36, no. 7-8, pp. 712–730, 2006.

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Maojo, V; Garcia-Remesal, M; Billhardt, H; Alonso-Calvo, R; Perez-Rey, D; Martin-Sanchez, F

Designing new methodologies for integrating biomedical information in clinical trials Artículo de revista

En: Methods Inf Med, vol. 45, no. 2, pp. 180–185, 2006.

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2005

Perez-Rey, D; Crespo, J; Anguita, A; Perez-Ordoñez, J; Dorado, J; Feliu, G Bueno V; Estruch, A; Heredia, J

Biomedical image processing integration through INBIOMED: A web services-based platform Artículo de revista

En: Lecture notes in Computer Science, vol. 3745, pp. 34-43, 2005.

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Heredia, J; Estruch, A; Coltell, O; Perez-Rey, D; de la Calle, G; Sanchez, J P; Sanz, F

Service Oriented Architecture for Biomedical Collaborative Research Artículo de revista

En: Computer Science, vol. 62, no. 71, pp. 252-261, 2005.

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